Sunday, July 17, 2016

TAGC 2016 Report (exported from meeting app)


TAGC 2016 Report

Session Notes

PgmNr D1530/B: flyDIVaS: A database for genus- and genome- wide divergence and selection in Drosophila.

Craig Stanley
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PgmNr P2020/B: How a Framework for Evolutionary Systems Biology Can Accelerate Reproducible Modeling of Mechanistic Fitness Landscapes.

Laurence Loewe
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PgmNr D197: Highly accurate prediction of early anterior-posterior enhancer sequences from ChIP-seq data.

Hamutal Arbel
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PgmNr P377: QTL mapping for hitchhiking behavior in C. elegans reveals evolutionary trade-off between dispersal and reproduction.

Daehan Lee
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PgmNr P381: Steps toward reproducible research.

Karl Broman
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Beyond cerevisiae: Exploiting yeast diversity in nature to understand genome evolution in diverse environments

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PgmNr Y517: NGS for 'No-pain Genetic Screens': Using transposons and Next-Gen Sequencing to unveil all important yeast loci in one go.

Agnes Michel
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PgmNr D227: Invasion dynamics in the fly gut microbiome.

Benjamin Obadia
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PgmNr M299: Adenoma Susceptibility Modulated by Variable Complex Gut Microbiota in a Rat Model of Familial Colon Cancer.

Susheel Bhanu Busi
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PgmNr M298: Genetic inhibition of MTOR during thymic Pre-T LBL development delays tumorigenesis and points to the IRF4-CDK6 pathway as a potential target in the treatment of T-ALL/LBL.

Beverly Mock
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PgmNr P388: Cryptic genetic variation and the evolution of complex traits.

Annalise Paaby
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PgmNr P380: Deep sequencing of whole transcriptomes across the Drosophila Genetic Reference Panel.

Logan Everett
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Complex Trait Evolution (P)

Karl Broman / Daehan Lee / Kjong-Van Lehmann / Yun Ding / Logan Everett / Bashir Bello / Wolfgang Busch / Lauren McIntyre
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PgmNr J8: Fishing for the secrets of stickleback and human evolution.

David Kingsley
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PgmNr J5: The Fred Kavli Foundation Distinguished Lecture: Flexibility and variability in behavior at the gene-environment interface.

Cori Bargmann
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PgmNr D1067/A: Tousled-like kinase regulates G2/M transition through Tak1 to activate p38a MAPK.

Gwo-Jen Liaw
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PgmNr E8020/B: Using the Yeast Mating Response to Study Genetics and Cell Biology: From the Biology Lab to the Computer Lab and Back.

Michelle Mondoux
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Spotlight on Undergraduate Research using Genetics Research Models

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PgmNr Y504: Extrachromosomal Circular DNA – A Key Player in Creation of Copy Number Variation?

Henrik Møller
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PgmNr M296: The function of the histone demethylase KDM1A (LSD1) in Tau mediated neurodegeneration.

David Katz
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PgmNr M293: Genetic control of the epigenetic landscape.

Christopher Baker
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Epigenetics (M)

Jeannie Lee / David Katz / Gregory Carter / Christopher Baker / Nora Engel / Stefan Pinter / Weipeng Mu
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PgmNr P356: ­­­Evidence for the interspecies transfer of a driving X chromosome.

Christopher Leonard
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PgmNr D194: Natural variation in binding site affinity controls stochastic gene expression in the fly eye.

Caitlin Anderson
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Regulation of Gene Expression I (D)

Christine Rushlow / Shawn Little / Hongtao Chen / Justin Crocker / Caitlin Anderson / Robin Fropf / Hamutal Arbel / Robert Zinzen
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PgmNr D190: Modulation of bursting kinetics generates specific gene expression rates in the early embryo.

Shawn Little
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PgmNr P365: The Critical Functions Encoded by Synonymous Sites.

Heather Machado
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YGM Lifetime Achievement Award: James Broach and Scientific Session Stress Sensing and Damage Control (Y)

Paul Magwene / Tina Sing / Sylvain Huard / David Stieg / Jessica Lao / James Broach / Peter Stirling
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PgmNr Y3161/B: Unbiased functional annotation of compound libraries using yeast chemical genomics.

Sheena Li
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PgmNr Y518: Exploring Functional Genetic Suppression Interactions on a Global Scale.

Jolanda van Leeuwen
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PgmNr Y515: Scalable tools for the quantitative analysis of chemical-genetic interactions from sequencing-based chemical-genetic interaction screens.

Scott Simpkins
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PgmNr Y511: A global yeast genetic network maps cellular function.

Michael Costanzo
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PgmNr Y494: A cytokinesis checkpoint.

Eric Weiss
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PgmNr P346: Investigating cryptic genetic variation through position effect variegation in a panel of Drosophila melanogaster inbred lines.

Joyce Kao
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Haematopoiesis and Vascular Biology (Z)

Erica Bresciani / Anming Meng / Hilary Clay / Weijun Pan / Brant Weinstein / Zhen Jiang / Naguissa Bostaille / Makoto Kobayashi
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Population Genetics (P)

Alexander Platt / Jody Hey / Hosseinali Asgharian / Ryan Gutenkunst / Guillaume Charron / Stephen Christy / Olaitan Awe / Ivana Cvijovic
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PgmNr Y514: High throughput protein-protein interaction sequencing using iSeq.

Zhimin Liu
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PgmNr Y512: A programmable sensor for protein solubility in yeast uncovers ecological prion-switching factors.

Gregory Newby
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Cancer (Z)

Joan Heath / Ana Neto / Myron Ignatius / Andrew Cox / Rodney Stewart / Qin Tang / Charles Williams / Minna Roh-Johnson
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Cancer and Immunology (M)

Tyler Jacks / Beverly Mock / Hui Zong / Clare Smith / Kendra Williams / Susheel Bhanu Busi / Kent Hunter
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Yeast Evolution in and out of the Lab (Y)

Aashiq Kachroo / Joel McManus / Sara Hanson / Seungsoo Kim / Henrik Møller / Barbara Dunn / Joseph Schacherer / Rohith Srivas
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PgmNr P364: The fitness landscape of a tRNA gene.

Chuan Li
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Molecular Evolution (P)

Heather Machado / Meihua Kuang / Benjamin Wilson / Chuan Li / Amy Lawton-Rauh / Felix Feyertag / Julia Piper / Rafik Neme
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PgmNr Y500: The Quick and the Dead: Single-cell Demography at the Yeast Thermal Limit.

Paul Magwene
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PgmNr P357: The mutational structure of metabolism in Caenorhabditis elegans.

Charles Baer
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PgmNr P354: Decomposing intra-genomic heterogeneity in mutation bias in coding sequences.

Cedric Landerer
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PgmNr P351: CRISPR-directed mitotic recombination enables genetic mapping without crosses.

Meru Sadhu
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Mutation & Recombination (P)

Charles Baer / Vaughn Cooper / Beth Dumont / Richard Wang / Cedric Landerer / Christopher Leonard / Thomas Peterson / Meru Sadhu
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Emerging Technologies - Imaging (Z)

Keith Cheng / Kohei Hatta / Francesca Tuazon / Ben Cox / Nicola Lockwood / Antonio Ortiz / Yifu Ding / Ravindra Peravali
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PgmNr M253: 3D image analysis of embryonic lethal mutations: An IMPC/KOMP2 resource.

Mary Dickinson
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Cryptic Variation and Robustness (P)

Joyce Kao / Xinzhu Wei / J. David Van Dyken / Jonathan Fitz Gerald / Kerry Geiler-Samerotte / Thanat Chookajorn
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PgmNr P344: The genomic architecture of interactions between natural polymorphisms and environments in yeast growth.

Xinzhu Wei
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PgmNr P347: The cost of noise in biochemical reactions and the evolutionary limits of cellular robustness.

J. David Van Dyken
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PgmNr J7: Of mice, men and birds: meiotic recombination and its evolution.

Molly Przeworski
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PgmNr Y506: The 1002 yeast genomes project.

Joseph Schacherer
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PgmNr Y507: Integrative Analysis of the Variation in the Regulatory Network Among Strains of Yeast.

Rohith Srivas
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PgmNr P358: Ongoing duplicate gene resolution shapes diversified metabolic networks: a functional comparative study of two yeast GALalactose utilization networks.

Meihua Kuang
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PgmNr D1269/B: Receptor-based Mapping Reveals the Architecture of a Neural Circuit that Governs a Behavioral Sequence in Drosophila.

Feici Diao
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Neural Circuits, Neurophysiology and Behavior (Z)

Idan Elbaz / Erik Duboué / Alessandro Filosa / Timothy Erickson / Anna Kramer / Mingyong Wang / Manxiu Ma / Roshan Jain
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PgmNr Z624: MECP2-IGF1 signaling determines how neural circuits interpret sensory information.

Nicholas Santistevan
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PgmNr P338: Effect of Genetic Architecture and Sample Size on the Accuracy of Genomic Prediction of Complex Traits.

Fabio Morgante
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PgmNr P339: A Powerful Yeast Mapping Panel for Complex Trait Genetics.

Daniel Skelly
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PgmNr W420: Caenorhabditis Genetics Center (CGC).

Aric Daul
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PgmNr Y469: A cradle-to-grave analysis of cis-regulatory variation in yeast.

Jennifer Andrie
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PgmNr Y471: Stress-dependent transcriptome changes serve to reallocate translational capacity during stress acclimation.

Yi-Hsuan Ho
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PgmNr P323: Drosophila melanogaster-specific genes rapidly evolved strong fitness effects.

Nicholas VanKuren
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PgmNr P325: Genome-wide signals of adaptation in mammals and the arms race with viruses.

David Enard
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PgmNr Y485: Genetic and environmental backgrounds constrain the course of evolutionary rescue by compensatory mutations.

Véronique Hamel
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Lee Hartwell Lecture: Susan Gasser and Scientific Session: Tackling Human Disease Using Yeast (Y)

Susan Gasser / Mert Icyuz / Lai Wong / Robert Reid / Véronique Hamel / Quan Zhong / Neta Agmon
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PgmNr W403: Quantitative analysis of context-dependent regulation by the Wnt pathway at single cell resolution.

John Murray
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PgmNr P316: The hidden complexity of Mendelian inheritance in natural populations.

Joseph Schacherer
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PgmNr Y468: Genome-wide detection of genomic fluctuations in Saccharomyces cerevisiae.

Kim Palacios Flores
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PgmNr P321: Diverse genetic architectures lead to the same cryptic phenotype in a yeast cross.

Ian Ehrenreich
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PgmNr J4: Accelerating Insights from Basic Genetics.

Francis Collins
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Genetics and Determinants of Health Joint Plenary Session (J)

Harry Dietz / Amita Sehgal / Leonard Zon / Francis Collins
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PgmNr Y3050/B: Membrane trafficking underlies aging and rejuvenation.

Kiersten Henderson
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PgmNr Y3016/A: Regulation of lifespan by phosphate starvation response factors in budding yeast.

Yukio Mukai
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PgmNr Y3010/A: Regulation of lifespan by vitamin B₆ metabolism-related genes in yeast.

Yuka Kamei
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PgmNr D1529/A: Enhanced orthology data in FlyBase.

Steven Marygold
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PgmNr D1528/C: Model organism analysis using InterMine.

Rachel Lyne
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PgmNr D1339/C: Untargeted metabolomics elucidates the role of diet and triglyceride storage in Drosophila melanogaster larvae.

Vishal Oza
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PgmNr Y510: The 3D organization of the diploid Saccharomyces genome.

Seungsoo Kim
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PgmNr Y497: Protein sequestration after genotoxic stress regulates splicing.

Peter Stirling
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PgmNr Y496: 'Flipping the Switch': ROS-induced degradation of Med13 by SCFGrr1 mediates mitochondrial fragmentation and cell death.

David Stieg
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PgmNr Y489: Systematic functional analysis of resistance-conferring mutations.

Lai Wong
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PgmNr Y488: Genome-Wide Analysis in Yeast to Identify Molecular Targets Promoting Readthrough.

Mert Icyuz
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PgmNr W4120/C: SSBD: an open database of quantitative data and microscopy images of biological dynamics.

Yukako Tohsato
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PgmNr Y3191/B: Integrating Post-Translational Modification Data into the Saccharomyces Genome Database.

Sage Hellerstedt
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PgmNr D1530/B: flyDIVaS: A database for genus- and genome- wide divergence and selection in Drosophila.

Craig Stanley
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PgmNr D1526/A: REDfly: The Regulatory Element Database for Drosophila.

Marc Halfon
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PgmNr D160: Features and Applications of FlyCircuit Database – From Fluorescent Images to the Drosophila Connectome.

Chi-Tin Shih
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Physiology, Organismal Growth & Aging (D)

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Physiology, Organismal Growth & Aging (D)

William Ludington / Annick Sawala / Xueyang Pan / Xun Huang / Francesca Froldi / Jessica Tang / Bruno Hudry / Michele Shirasu-Hiza
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PgmNr W421: Genetic Background and Experimental Reproducibility Play Critical Roles in Identifying Chemical Compounds with Robust Positive Effects on Longevity.

Mark Lucanic
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Aging and Cell Death (W)

Rebecca Kaplan / Nicole Iranon / Marissa Fletcher / Ryan Haley / Mark Lucanic / Sean Curran
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Getting Even More Out of SGD

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Using CyVerse Cyberinfrastructure to Enable Data Intensive Research, Collaboration, and Education

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The InterMOD Consortium: A common interface to model organism data

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Model Systems in Drug Discovery

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Finding Funding

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MOD (FlyBase, MGI, SGD, WormBase, Zfin) Demo Room Open for Tutorials and Discussions

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PgmNr Y3155/B: Global analysis of genes and metabolites influencing chronological lifespan.

Haley Albright
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PgmNr Y3044/B: Mitochondria as signaling organelles in aging.

Vladimir Titorenko
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PgmNr P376: Large scale splicing QTL analysis of cancer genomes.

Kjong-Van Lehmann
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PgmNr D1322/A: Genetic and mathematical dissection of tumor heterogeneity that triggers cancer progression.

Masato Enomoto
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PgmNr W429: Developing quantitative resource for computational analysis from images of C. elegans embryogenesis in a public database Phenobank.

Yukako Tohsato
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PgmNr Y530: An unexpected role for casein kinases in glucose sensing and signaling.

Chris Snowdon
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PgmNr M314: Cas9 RNA-guided nuclease gene editing – rapid disease modeling in mice.

Lauryl Nutter
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PgmNr P396: Can epistasis or GxE be predictable? Lessons from mitonuclear interactions in Drosophila.

David Rand
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PgmNr P392: High-throughput measurements of the evolutionary consequences of epistasis.

José Rojas Echenique
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CRISPR-based Genome Engineering

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Automated Tracking for Quantitative Phenotyping

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An Introduction to Using Galaxy for Genetic Data Analysis

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Finding Funding

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modMetabolome: Model Organism Metabolomics Consortium Workshop

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Systems Genetics in Complex Populations

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Plenary Session 2: Systems Biology (W)

Itai Yanai / Oliver Hobert / Mike Boxem / Aric Daul
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PgmNr P336: Fitness pleiotropy and the phenotypic basis of adaptation in experimentally evolving yeast.

Sandeep Venkataram
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PgmNr P334: Using network theory to infer and analyze population structure from genetic data.

Gili Greenbaum
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James F. Crow Symposium (P)

Daniel Hartl / Emily Behrman / Sarah Sander / Heath Blackmon / Matthew S Ackerman / Gili Greenbaum / Sandeep Venkataram / Bret Payseur
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Population Genomics (P)

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Human Disease Models (M)

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Hematopoiesis and Vascular Biology (Z)

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Genome Stability and Dynamics (C)

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Evolution & Quantitative Genetics (D)

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Comparative Genomics, Computational Methods & Evolution (M)

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Cell Cycle & Cell Death (D)

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Cancer (Z)

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Aging and Cell Death (W)

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PgmNr W408: CRISPR-mediated synthetic genetic analysis reveals genetic interactions among RNA binding proteins affecting fitness and lifespan.

Adam Norris
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PgmNr W407: Longevity and its transgenerational inheritance is enabled by H3K9 methylation.

Teresa Lee
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Genomics, Gene Regulation and Technology (W)

Adam Norris / Teresa Lee / John Murray / Pavak Shah / Jonathan Liu / Chiara Cerrato / Peter Askjaer / Sevinc Ercan
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PgmNr M262: Post-translational mechanisms buffer protein abundance against transcriptional variation.

Gary Churchill
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PgmNr M261: Discovery, assembly, and annotation of subspecies specific haplotypes in classical and wild-derived mouse strains.

Jingtao Li
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Comparative Genomics, Computational Methods and Evolution (M)

Yoichi Gondo / Thomas Keane / Hopi Hoekstra / Jingtao Li / Gary Churchill
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PgmNr Y466: Mechanism of non-genetic heterogeneity in yeast growth rate and stress resistance.

Shuang Li
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PgmNr M255: GENCODE: using new technologies to improve reference mouse genome annotation.

Mark Thomas
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PgmNr M252: Large-scale discovery of embryonic lethal phenotypes in mice.

Stephen Murray
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PgmNr M251: Building the first comprehensive functional catalogue of a mammalian genome.

Martin Hrabé de Angelis

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